I ran into this on my ITC car and the solution is to bleed both pistons on the master cylinder at the same time. If you only do one corner at a time, the piston cannot make a full displacement becaust it is stopped by the other piston since it's still sealed. If the brake line circuits are still stock (i.e. diagonal braking), you can do BOTH fronts at the same time, and this will allow full travel of the pistons. More than likely this will expel any air hiding in the master cylinder.
This also applies to dual master cylinder setups like a Wilwood balance bar setup. I've known many racers who've almost come to grief trying to bleed these setups with the "conventional" method, and not being able to purge the air from the system. As soon as I tell them to do BOTH master cylinders at the same time (i.e. one front and one rear), VOILA! problem solved!
Here's an unsolicited tip for bleeding the brakes by yourself without a "Mityvac" or expensive vacuum bleed system. This assumes the car is up on 4 jackstands, wheels off, ready.
1. Get two plastic coke bottles, poke a hole in the cap and insert a long length of aquarium tubing.
2. Put the tubing on the bleeders on one front and one rear brake, and put the coke bottles on the floor beneath the calipers.
3. Open both bleeders and allow gravity to begin to force some fluid out of the bleeders.
4. Push the brake pedal to the floor, and jam it there with a broomstick or long rod of some sort. I use one of those adjustable "cargo bars" used to keep stuff from flying around the bed of the pickup truck, and adjust it to length so that I can jam it into the seatback and hold the pedal on the floor.
5. Close both bleeders.
6. Remove broomstick/rod and let the pedal come back up. Pump it (slowly) a couple of times to make sure it has released fully and re-filled the master cylinder pistons with fluid.
Repeat steps 2-6 several times until the fluid is clear/new and is free of any air. Make sure the bleeders are CLOSED before you release the brake pedal, or you'll suck air back into the calipers and have to start all over again.
I've been doing this for nearly 10 years, and it works. This way I don't have to have a helper in the garage to bleed the brakes.
MC