The book says in section D,1,c, "Air intake source shall be within the confines of the engine compartment or stock location". It also says, "Air intake hoses, tubes, pipes, resonators, intake mufflers, housings, etc,.....may be removed or substituted". There are only two possibilities.
The second quote that allows you to remove or substitute the resonator only allows for just that. You can remove it, or replace it with something that performs the same funtion.
Secion D starts by saying, "No permitted componant/modification shall additionally perform a prohibited function".
If removing your resonator opens up an alternate air intake that is not one of the two allowed by the first quote, the only way you can remove the resonator is to plug the resulting hole in your intake system to avoid the prohibited funtion.
I think that placing anything outside that opening to filter or even direct air through the hole the resonator was in is outside the intent of the rules. I think that you can leave the new hole in the fender well that may exist from the allowed removal of the resonator without covering it, it just cannot direct air into your intake.
I work tech, and while our primary job is to verify safety, if bought to my attention I would provide the owner with information as stated above. If the car was protested, that is how I would decide it, but protests go through several people (stewarts) at an event so it would not be totally my call.